Index

_

__init__() (protoclass.data_management.ADCModality method) (protoclass.data_management.DCEModality method) (protoclass.data_management.DWIModality method) (protoclass.data_management.GTModality method) (protoclass.data_management.OCTModality method) (protoclass.data_management.RDAModality method) (protoclass.data_management.T2WModality method) (protoclass.extraction.BrixQuantificationExtraction method) (protoclass.extraction.DCTExtraction method) (protoclass.extraction.EdgeSignalExtraction method) (protoclass.extraction.EnhancementSignalExtraction method) (protoclass.extraction.GaborBankExtraction method) (protoclass.extraction.HaralickExtraction method) (protoclass.extraction.IntensitySignalExtraction method) (protoclass.extraction.LBPExtraction method) (protoclass.extraction.MRSISpectraExtraction method) (protoclass.extraction.PUNQuantificationExtraction method) (protoclass.extraction.PhaseCongruencyExtraction method) (protoclass.extraction.RelativeQuantificationExtraction method) (protoclass.extraction.SemiQuantificationExtraction method) (protoclass.extraction.SpatialExtraction method) (protoclass.extraction.ToftsQuantificationExtraction method) (protoclass.extraction.WeibullQuantificationExtraction method)

A

ADCModality (class in protoclass.data_management)

B

BrixQuantificationExtraction (class in protoclass.extraction)

build_heatmap() (protoclass.data_management.DCEModality method)

C

check_filename_pickle_load() (in module protoclass.utils) check_filename_pickle_save() (in module protoclass.utils) check_img_filename() (in module protoclass.utils) check_modality() (in module protoclass.utils) check_modality_gt() (in module protoclass.utils)

check_modality_inherit() (in module protoclass.utils) check_npy_filename() (in module protoclass.utils) check_path_data() (in module protoclass.utils) compute_aif() (protoclass.extraction.ToftsQuantificationExtraction static method) conc_to_signal() (protoclass.extraction.ToftsQuantificationExtraction method)

D

DCEModality (class in protoclass.data_management)

DCTExtraction (class in protoclass.extraction) DWIModality (class in protoclass.data_management)

E

EdgeSignalExtraction (class in protoclass.extraction)

EnhancementSignalExtraction (class in protoclass.extraction) extract_gt_data() (protoclass.data_management.GTModality method)

F

find_nearest() (in module protoclass.utils) fit() (protoclass.extraction.BrixQuantificationExtraction method) (protoclass.extraction.DCTExtraction method) (protoclass.extraction.EdgeSignalExtraction method) (protoclass.extraction.EnhancementSignalExtraction method) (protoclass.extraction.GaborBankExtraction method) (protoclass.extraction.HaralickExtraction method) (protoclass.extraction.IntensitySignalExtraction method) (protoclass.extraction.LBPExtraction method) (protoclass.extraction.MRSISpectraExtraction method) (protoclass.extraction.PUNQuantificationExtraction method) (protoclass.extraction.PhaseCongruencyExtraction method) (protoclass.extraction.RelativeQuantificationExtraction method) (protoclass.extraction.SemiQuantificationExtraction method) (protoclass.extraction.SpatialExtraction method) (protoclass.extraction.ToftsQuantificationExtraction method) (protoclass.extraction.WeibullQuantificationExtraction method)

G

gabor_filter_3d() (in module protoclass.extraction) GaborBankExtraction (class in protoclass.extraction) get_pdf() (protoclass.data_management.ADCModality method) (protoclass.data_management.T2WModality method)

get_pdf_list() (protoclass.data_management.DCEModality method) GTModality (class in protoclass.data_management)

H

HaralickExtraction (class in protoclass.extraction)

I

IntensitySignalExtraction (class in protoclass.extraction) is_read() (protoclass.data_management.ADCModality method) (protoclass.data_management.DCEModality method) (protoclass.data_management.DWIModality method) (protoclass.data_management.GTModality method) (protoclass.data_management.OCTModality method) (protoclass.data_management.RDAModality method) (protoclass.data_management.T2WModality method)

L

LBPExtraction (class in protoclass.extraction) load_from_pickles() (protoclass.extraction.BrixQuantificationExtraction method) (protoclass.extraction.DCTExtraction method) (protoclass.extraction.EdgeSignalExtraction method) (protoclass.extraction.EnhancementSignalExtraction method) (protoclass.extraction.GaborBankExtraction method) (protoclass.extraction.HaralickExtraction method) (protoclass.extraction.IntensitySignalExtraction method) (protoclass.extraction.LBPExtraction method) (protoclass.extraction.MRSISpectraExtraction method) (protoclass.extraction.PUNQuantificationExtraction method) (protoclass.extraction.PhaseCongruencyExtraction method) (protoclass.extraction.RelativeQuantificationExtraction method) (protoclass.extraction.SemiQuantificationExtraction method) (protoclass.extraction.SpatialExtraction method) (protoclass.extraction.ToftsQuantificationExtraction method) (protoclass.extraction.WeibullQuantificationExtraction method)

M

MRSISpectraExtraction (class in protoclass.extraction)

O

OCTModality (class in protoclass.data_management)

P

PhaseCongruencyExtraction (class in protoclass.extraction) population_based_aif() (protoclass.extraction.ToftsQuantificationExtraction static method) protoclass.data_management (module)

protoclass.extraction (module) protoclass.utils (module) PUNQuantificationExtraction (class in protoclass.extraction)

R

RDAModality (class in protoclass.data_management) read_data_from_path() (protoclass.data_management.ADCModality method) (protoclass.data_management.DCEModality method) (protoclass.data_management.DWIModality method) (protoclass.data_management.GTModality method) (protoclass.data_management.OCTModality method) (protoclass.data_management.RDAModality method) (protoclass.data_management.T2WModality method)

RelativeQuantificationExtraction (class in protoclass.extraction)

S

save_to_pickles() (protoclass.extraction.BrixQuantificationExtraction method) (protoclass.extraction.DCTExtraction method) (protoclass.extraction.EdgeSignalExtraction method) (protoclass.extraction.EnhancementSignalExtraction method) (protoclass.extraction.GaborBankExtraction method) (protoclass.extraction.HaralickExtraction method) (protoclass.extraction.IntensitySignalExtraction method) (protoclass.extraction.LBPExtraction method) (protoclass.extraction.MRSISpectraExtraction method) (protoclass.extraction.PUNQuantificationExtraction method) (protoclass.extraction.PhaseCongruencyExtraction method) (protoclass.extraction.RelativeQuantificationExtraction method) (protoclass.extraction.SemiQuantificationExtraction method) (protoclass.extraction.SpatialExtraction method) (protoclass.extraction.ToftsQuantificationExtraction method) (protoclass.extraction.WeibullQuantificationExtraction method)

SemiQuantificationExtraction (class in protoclass.extraction) signal_to_conc() (protoclass.extraction.ToftsQuantificationExtraction method) SpatialExtraction (class in protoclass.extraction)

T

T2WModality (class in protoclass.data_management) ToftsQuantificationExtraction (class in protoclass.extraction) transform() (protoclass.extraction.BrixQuantificationExtraction method) (protoclass.extraction.DCTExtraction method) (protoclass.extraction.EdgeSignalExtraction method) (protoclass.extraction.EnhancementSignalExtraction method) (protoclass.extraction.GaborBankExtraction method) (protoclass.extraction.HaralickExtraction method) (protoclass.extraction.IntensitySignalExtraction method) (protoclass.extraction.LBPExtraction method) (protoclass.extraction.MRSISpectraExtraction method) (protoclass.extraction.PUNQuantificationExtraction method) (protoclass.extraction.PhaseCongruencyExtraction method) (protoclass.extraction.RelativeQuantificationExtraction method) (protoclass.extraction.SemiQuantificationExtraction method) (protoclass.extraction.SpatialExtraction method) (protoclass.extraction.ToftsQuantificationExtraction method) (protoclass.extraction.WeibullQuantificationExtraction method)

U

update_histogram() (protoclass.data_management.ADCModality method) (protoclass.data_management.DCEModality method) (protoclass.data_management.DWIModality method) (protoclass.data_management.GTModality method) (protoclass.data_management.OCTModality method) (protoclass.data_management.RDAModality method) (protoclass.data_management.T2WModality method)

W

WeibullQuantificationExtraction (class in protoclass.extraction)